PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791235.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 781aa    MW: 89745.4 Da    PI: 7.6983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.2e-2157132190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eHnHe+ 
  XP_009791235.1  57 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEHNHEFE 132
                     6***************************************976..............589***************************986 PP

2FAR166.38.3e-21217291189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn+YA + GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC   ++++++++g+w v+++++eHnHel
  XP_009791235.1 217 EFYNAYAANSGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGTFMRIQRQDTGRWLVDRFQNEHNHEL 291
                     6**************************************9998..............4899***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1757131IPR004330FAR1 DNA binding domain
PfamPF031013.2E-16217291IPR004330FAR1 DNA binding domain
PfamPF105517.5E-26389482IPR018289MULE transposase domain
PfamPF044345.4E-8666700IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.46667703IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-8678705IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MSREELDNPM TVRAKPASLA IVNNNNGYHR DNEEEEGESK LEPNVGLEFD SAEEAQEFYN  60
LYATKLGFRI RIGQLYRSRV DGSVISRRFV CSKEGFQTTS RTGCPAFIRV QKADSGKWVL  120
ANVKKEHNHE FETSGEICPS RIQRKNIPNP KSSVVVVSTR TGLRSIDEDG PGPSGIIDLK  180
RFKRERIDVE RIDVELQPRG SEPYKGLEFT SADEAYEFYN AYAANSGFKV RIGQLFRSKN  240
DGSITSRRFV CSKEGHQHPS RVGCGTFMRI QRQDTGRWLV DRFQNEHNHE LGMPADASGR  300
VKGFKEEASS VLENMELVEL NGGLSLVTRG RESRIGSDWY NELFEYFQAR QAGDMGFFYA  360
VEMHNGRALS VFWADARSRF SCTQFGDAVV FETTYRKEGS YSVPLASFIG INHHRQPVLL  420
GCALIAEESE ESFTWVFQAW LRAMSGRHPV SMVADQDRAI QHSIAQVFPG IHHRFSAWQI  480
KATEQENIGA LLSMNPEFKY EYETCIFQSQ TANEFEAAWN VLVNKYNLRK NTWLMEMYRM  540
RKSWVPLHIR GTFFAGIPMD GSLKSYFGTI LTSQTPLSEF LIRYEKALEQ RREEERKEDF  600
NSFNLQAVLH TKDPIEDQCR RFYTITMFQV FQKELLECYS FVGIKINVEG AISRYLVQKS  660
GSGDERNTVA FNASNLKVSC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWTKDA  720
KYGILRDVDS GGASQDHKAL MLWSLREEAK NYIEAGTASL ERYKLAFEIM QEGRRNLCWQ  780
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791237.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_009791236.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_009791235.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_016487163.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_016487162.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLK4D3K80.0K4D3K8_SOLLC; Uncharacterized protein
STRINGSolyc10g084220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7